1.0 my analysis Demo analysis Laurent Jourdren filterreads trim.length.threshold 11 quality.threshold 12 mapreads mapper bowtie mapper.arguments -k 2 --best filtersam removeunmapped removemultimatches expression counter htseq-count genomic.type gene attribute.id ID stranded no overlap.mode union remove.ambiguous.cases false normalization r.execution.mode docker diffana disp.est.method blind disp.est.sharing.mode fit-only disp.est.fit.type parametric r.execution.mode docker main.docker.uri unix:///var/run/docker.sock